2022-04-24

Slide with Bullets

  • Bullet 1
  • Bullet 2
  • Bullet 3

Slide with R Output

summary(data)
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##     Sample               Age             Dfi           Smoking      
##  Length:387         Min.   :46.00   Min.   :12.10   Min.   :0.0000  
##  Class :character   1st Qu.:64.00   1st Qu.:19.05   1st Qu.:0.0000  
##  Mode  :character   Median :70.00   Median :25.20   Median :1.0000  
##                     Mean   :70.22   Mean   :25.07   Mean   :0.5116  
##                     3rd Qu.:77.00   3rd Qu.:30.15   3rd Qu.:1.0000  
##                     Max.   :92.00   Max.   :45.10   Max.   :1.0000  
##                                                                     
##     PCaHist             BMI         BMI_class          Dfi_class        
##  Min.   :0.00000   Min.   :14.12   Length:387         Length:387        
##  1st Qu.:0.00000   1st Qu.:21.26   Class :character   Class :character  
##  Median :0.00000   Median :23.39   Mode  :character   Mode  :character  
##  Mean   :0.05168   Mean   :23.64                                        
##  3rd Qu.:0.00000   3rd Qu.:25.95                                        
##  Max.   :1.00000   Max.   :36.46                                        
##                                                                         
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##     Sample               Age             Dfi           Smoking          PCaHist       
##  Length:387         Min.   :46.00   Min.   :12.10   Min.   :0.0000   Min.   :0.00000  
##  Class :character   1st Qu.:64.00   1st Qu.:19.05   1st Qu.:0.0000   1st Qu.:0.00000  
##  Mode  :character   Median :70.00   Median :25.20   Median :1.0000   Median :0.00000  
##                     Mean   :70.22   Mean   :25.07   Mean   :0.5116   Mean   :0.05168  
##                     3rd Qu.:77.00   3rd Qu.:30.15   3rd Qu.:1.0000   3rd Qu.:0.00000  
##                     Max.   :92.00   Max.   :45.10   Max.   :1.0000   Max.   :1.00000  
##                                                                                       
##       BMI         BMI_class          Dfi_class             Group          PCRsuccess
##  Min.   :14.12   Length:387         Length:387         Min.   :0.0000   Min.   :1   
##  1st Qu.:21.26   Class :character   Class :character   1st Qu.:0.0000   1st Qu.:1   
##  Median :23.39   Mode  :character   Mode  :character   Median :0.0000   Median :1   
##  Mean   :23.64                                         Mean   :0.4987   Mean   :1   
##  3rd Qu.:25.95                                         3rd Qu.:1.0000   3rd Qu.:1   
##  Max.   :36.46                                         Max.   :1.0000   Max.   :1   
##                                                                                     
##      TNM                 AJCC            PSA            Gleason           mtDNA       
##  Length:387         Min.   :1.000   Min.   :  0.01   Min.   : 5.000   Min.   :0.3460  
##  Class :character   1st Qu.:3.000   1st Qu.:  1.67   1st Qu.: 6.000   1st Qu.:0.7010  
##  Mode  :character   Median :4.000   Median :  3.52   Median : 7.000   Median :0.8650  
##                     Mean   :3.432   Mean   : 29.33   Mean   : 7.233   Mean   :0.9348  
##                     3rd Qu.:4.000   3rd Qu.: 53.20   3rd Qu.: 8.000   3rd Qu.:1.0975  
##                     Max.   :4.000   Max.   :220.49   Max.   :10.000   Max.   :2.2980  
##                     NA's   :197                      NA's   :198                      
##      Tumor         LymphNodes       Metastasis    Group_names       
##  Min.   :0.000   Min.   :0.0000   Min.   :0.000   Length:387        
##  1st Qu.:3.000   1st Qu.:0.0000   1st Qu.:0.000   Class :character  
##  Median :3.000   Median :0.0000   Median :2.000   Mode  :character  
##  Mean   :3.279   Mean   :0.3421   Mean   :1.042                     
##  3rd Qu.:4.000   3rd Qu.:1.0000   3rd Qu.:2.000                     
##  Max.   :5.000   Max.   :3.0000   Max.   :3.000                     
##  NA's   :197     NA's   :197      NA's   :197

Slide with half of the outliers

Slide with other half of the outliers

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======= >>>>>>> 77bbe68dd3445f3a2a0bcf1868c7619753450bad ## Group PCRsuccess TNM AJCC ## Min. :0.0000 Min. :1 Length:387 Min. :1.000 ## 1st Qu.:0.0000 1st Qu.:1 Class :character 1st Qu.:3.000 ## Median :0.0000 Median :1 Mode :character Median :4.000 ## Mean :0.4987 Mean :1 Mean :3.432 ## 3rd Qu.:1.0000 3rd Qu.:1 3rd Qu.:4.000 ## Max. :1.0000 Max. :1 Max. :4.000 ## NA's :197 ## PSA Gleason mtDNA Tumor ## Min. : 0.01 Min. : 5.000 Min. :0.3460 Min. :0.000 ## 1st Qu.: 1.67 1st Qu.: 6.000 1st Qu.:0.7010 1st Qu.:3.000 ## Median : 3.52 Median : 7.000 Median :0.8650 Median :3.000 ## Mean : 29.33 Mean : 7.233 Mean :0.9348 Mean :3.279 ## 3rd Qu.: 53.20 3rd Qu.: 8.000 3rd Qu.:1.0975 3rd Qu.:4.000 ## Max. :220.49 Max. :10.000 Max. :2.2980 Max. :5.000 ## NA's :198 NA's :197 ## LymphNodes Metastasis Group_names ## Min. :0.0000 Min. :0.000 Length:387 ## 1st Qu.:0.0000 1st Qu.:0.000 Class :character ## Median :0.0000 Median :2.000 Mode :character ## Mean :0.3421 Mean :1.042 ## 3rd Qu.:1.0000 3rd Qu.:2.000 ## Max. :3.0000 Max. :3.000 ## NA's :197 NA's :197

Slide with half of the outliers

Slide with other half of the outliers

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>>>>>>> fc898aacc3564b980b14fbc0b51264457b5e9c51 >>>>>>> d85d707720700fb545cca4876612b801e18a6c52 >>>>>>> 77bbe68dd3445f3a2a0bcf1868c7619753450bad

Slide with PCA

PCAPCAPCA

PCA

Interesting Boxplot

## Logistic regression

 ======= >>>>>>> d85d707720700fb545cca4876612b801e18a6c52 >>>>>>> 77bbe68dd3445f3a2a0bcf1868c7619753450bad